初步筛选心血管相关基因——表达序列片段测定法

Screening Cardiovascular Associated Genes by Express Sequence Tags

  • 摘要: 目的从正常人胎儿心脏cDNA文库中,用DNA自动测序的方法筛选心血管相关基因。方法(1)人胚胎心cDNA文库的构建;(2)挑取有目的基因片段插入的噬菌斑,选用正向T3和反向T7引物做PCR扩增;(3)直接使用其PCR产物做DNA测序模板,用荧光标记的T3B引物做再次PCR扩增;(4)用DNA测序仪(pharmacia)测定基因表达序列片段(ESTs);(5)将所获得的ESTs输入Genebank数据库做同源序列分析。结果(1)所构建的人胎儿心脏cDNA文库的库容量为1×109克隆,平均目的基因片段1.2~1.5kb,PCR产物阳性克隆检出率高达70%以上,用6%尿素-聚丙烯酰胺凝胶电泳5h,可测cDNA序列片段210~550bp,平均300bp;(2)在所测3132个克隆的ESTs中,新ESTs为47.4%,已知序列片段为44.1%。结论利用人胎儿心脏cDNA文库测定ESTs是筛选心血管基因的有效方法;构建高质量的cDNA文库是成功测定ESTs的保证。

     

    Abstract: Aim\ In ordor to screen cardiovascular associated genes from a human fetal heart(HFH) cDNA library,the express sequence tags(ESTs) were detected with automatic DNA sequencer.\ Methods\ (1)To construct HFH cDNA library,the total RNA was extracted from fetal heart.(2)Picking up plaques to prepare sequencing templates,the cDNA inserts was determined by PCR in the presence of vector primers flanking the inserts(using T 3 as forward and T 7 as reverse primer).(3)The PCR products were used directly for cycles sequencing using a fluorescence conjugated T 3B primer.(4)Following sequence generation using DNA sequencer.(5)The ESTs were compared with all sequences in Gene bank data bases.\ Results\ (1)The cDNA library titer was 1×10 9, the inserts were approximztely 12 ̄15 kb;the positive clones were more then 70%, the length of cDNA sequences were 210 ̄550 bp(average 300 bp) by electrophoresis of 6% ureapolyacrylamide gel in 5 hours;(2)The new sequences(or ESTs) were 474% and the known genes were 441% among 3132 ESTs.\ Conclusion\ This study shows that the method is useful to screen and identify cardiovascular associated genes by ESTs from HFH cDNA library, screening ESTs is ensured successfuly in construction of high quality cDNA library.

     

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